Everyone interested in microarray data standards is welcome to attend the first day talks and tutorials. The programming part of the jamboree (days 2-5) is directed for programmers, ontology and array domain experts with existing knowledge on MAGE. The purpose of the jamboree is to give the programmers an opportunity to come together to work on the next version of MAGE and the MGED ontology. Please make your own hotel and travel arrangements, and if you are planning to participate in the programming part of the jamboree, bring your own laptop computer.
| Agenda: |
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| Monday, May 8: |
| 9:00 am |
Opening Remarks
Mervi Heiskanen, NCICB |
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| 9:10 am |
caBIG overview
Ken Buetow, NCICB |
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| 9:45 am |
An introduction to caBIG Interoperability
George Komatsoulis, NCICB |
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| 10:30 am |
caBIG Integrative Cancer Research (ICR) tools and MAGE/FuGE
Carl Schaefer , NCICB |
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| Break |
| 11:15 am |
MAGE end user demonstrations (20 min each):
- GenePattern: Ted Liefeld, Broad Institute
- DWD: Everett Zhou,University of North Carolina
- caGRID: MAGE workflow presentation: Manav Kher
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| Lunch |
| 1:00 pm |
MGED Society Introduction
Catherine Ball, Stanford University |
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| 1:30 pm |
MGED ontology and FuGO tutorial/update
Chris Stockert, University of Pennsylvania |
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| 2:10 pm |
An overview of EBI's tools and resources for microarray data processing
Helen Parkinson, European Bioinformatics Institute |
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| Break |
| 3:00 pm |
A MAGE v2 tutorial/update
Michael Miller, Rosetta BioSoftware |
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| 3:40 pm |
MAGE-simple
Alvis Brazma, European Bioinformatics Institute |
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| 4:20 pm |
MAGE as an official data standard in caBIG
Discussion, lead by Dianne Reeves, NCICB |
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| Wednesday, May 10, 1-3:15pm - Round Table Discussion |
| 1:00 pm |
Meeting Goals (Anand Basu, NCICB) |
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| 1:05 pm |
webGenome use cases (David Hall, Research Triangle Institute) |
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| 1:30 pm |
caIntegrator use cases
Subha Madhavan, NCICB |
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| 2:00 pm |
Technical Session on Information Modeling in caBIG
George Komatsoulis, NCICB |
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| 2:30 pm |
Ontologies and controlled vocabularies in caBIG
Frank Hartel, NCICB |
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| 2:50 pm |
Applicability of Biomaterials package for handling Biospecimens
Ian Fore, NCICB |
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| 3:00 pm |
Discussion, Action Items
Anand Basu, NCICB |
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| Tuesday, May 9 – Friday, May 12 |
| MAGEV2: continue working towards the 1st milestone. Discussion on API orientated use cases for MAGEV2 |
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| MAGE-simple: complete the specification for a text version of the MAGE-OM |
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| MGED ontology: work on STK components to ease incorporation of ontology terms into a MAGE document |
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